A number of mosques in the nearby towns of Halhoul, Sa’ir, Bet Ula, Durra and Bet Kahel were also reopened for the festival prayer.
The UAE's International Astronomy Center announced that the moon had set before the sun for all countries in the Muslim world on Friday, meaning that it could not have been seen on Friday night.
Rouhani said last week that the shrines would open for three hours in the morning and three hours in the afternoon.
"I am urging you not to travel during the Eid. Definitely, such trips mean new cases of infection...People should not travel to and from those high-risk red areas."